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uniharmony 0.0.4.dev9 documentation
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▶️ Getting Started
🛠️ Utilities
Multisite Data Simulation
MAREoS Benchmark Datasets
ON-Harmony Dataset
Datalad Integration
Site-Stratified Metrics
🧮 Methods
🤺 ComBat-based Harmonization
ComBat and neuroComBat
ComBat-GAM
CovBat
Neuroharmony
LongComBat
DeepComBat
PrettYharmonize
📈 Interpolation-based Harmonization
Inter-Site Matched Interpolation (ISMI)
Intra-Site Interpolation (ISI)
🔬 IQM-based Harmonization
BARTharm
🎛️ Examples
Basic examples
Characterise a multisite problem
Explore EoS with dimensionality reduction techniques
Compute metrics by site
Characterise a multisite problem with MAREoS
Discover biases in metrics by site
Impact of Effects of Site in ML
Multisite Data
Load ON-Harmony dataset
Load MAREoS dataset
Generate imbalance multisite data
Multisite data generation
ComBat Methods
Analysing NeuroComBat behaviour with imbalance across sites
Binary classification with NeuroComBat
Analysing ComBatGAM behaviour with imbalance across sites
Binary classification with ComBatGAM
Using NeuroComBat with MAREoS dataset
Using ComBatGAM with MAREoS dataset
Interpolation Methods
Binary classification using ISI
IntraSiteInterpolation advance usage
Multiclass classification using ISI
Multisite Harmonization using Inter-Site Matched Interpolation (ISMI)
Optimal Transport based Domain Adaptation
Binary classification using OTDA
🗺️ API Reference
uniharmony
verbosity
verbosity_context
uniharmony.datasets
make_multisite_classification
load_MAREoS
load_ONharmony
download_bids_dataset
clean_tmp
list_available_files
uniharmony.metrics
report_metrics_by_site
uniharmony.combat
NeuroComBat
ComBatGAM
uniharmony.interpolation
InterSiteMatchedInterpolation
IntraSiteInterpolation
uniharmony.ot
OptimalTransportDomainAdaptation
📂 CHANGELOG
.md
.pdf
CovBat
CovBat
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