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▶️ Getting Started
🛠️ Utilities
Multisite Data Simulation
MAREoS Benchmark Datasets
Datalad Integration
Site-Stratified Metrics
🧮 Methods
🤺 ComBat-based Harmonization
ComBat and neuroComBat
ComBat-GAM
CovBat
Neuroharmony
Longitudinal ComBat (LongComBat)
DeepComBat
PrettYharmonize
📈 Interpolation-based Harmonization
Inter-Site Matched Interpolation (ISMI)
Intra-Site Interpolation (ISI)
🔬 IQM-based Harmonization
BARTharm
🚄 Optimal Transport for Domain Adaptation
Optimal Transport Domain Adaptation (OTDA)
🎛️ Examples
Basic examples
Characterize a multisite problem
Explore EoS with dimensionality reduction techniques
Compute metrics by site
Characterise a multisite problem with MAREoS
Discover biases in metrics by site
Impact of Effects of Site in ML
Multisite Data
Download ON-Harmony dataset
Multisite data generation with covariates
Load MAREoS dataset
Multisite data generation with covariates
Explore ON-Harmony features
Generate imbalance multisite data
Multisite data generation
ComBat Methods
Analyzing ComBatGAM behavior with imbalance across sites
Binary classification with NeuroComBat
NeuroComBat effect in features
ComBatGAM effect on features
Analyzing NeuroComBat behavior with imbalance across sites
Analyzing ComBatGAM behavior with imbalance across sites
Using NeuroComBat with MAREoS dataset
Using ComBatGAM with MAREoS dataset
Interpolation Methods
Binary classification using ISI
Using Inter-Site Matched Interpolation (ISMI) with matching covariates
IntraSiteInterpolation advance usage
Multiclass classification using ISI
Multisite Harmonization using Inter-Site Matched Interpolation (ISMI)
Optimal Transport based Domain Adaptation
Binary classification using OTDA
🗺️ API Reference
uniharmony
verbosity
verbosity_context
uniharmony.datasets
make_multisite_classification
load_MAREoS
load_ONharmony
download_bids_dataset
clean_tmp
list_available_files
uniharmony.metrics
report_metrics_by_site
uniharmony.combat
NeuroComBat
ComBatGAM
uniharmony.interpolation
InterSiteMatchedInterpolation
IntraSiteInterpolation
uniharmony.ot
OptimalTransportDomainAdaptation
📂 CHANGELOG
.md
.pdf
load_ONharmony
Contents
Examples
load_ONharmony
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Examples
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Contents
Examples